Corticimicrobacter populi gen. nov., sp. nov., a member of the family Alcaligenaceae, isolated from symptomatic bark of Populus × euramericana canker.
Identifieur interne : 000B83 ( Main/Exploration ); précédent : 000B82; suivant : 000B84Corticimicrobacter populi gen. nov., sp. nov., a member of the family Alcaligenaceae, isolated from symptomatic bark of Populus × euramericana canker.
Auteurs : Yong Li [République populaire de Chine] ; Han Xue [République populaire de Chine] ; Danran Bian [République populaire de Chine] ; Li-Fang Gao [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2019.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Alcaligenaceae (classification), Alcaligenaceae (isolement et purification), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Ubiquinones (composition chimique), Écorce (microbiologie).
- MESH :
- composition chimique : Acides gras, Alcaligenaceae, Phospholipides, Ubiquinones.
- génétique : ADN bactérien, ARN ribosomique 16S.
- isolement et purification : Alcaligenaceae.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Phylogenèse, Techniques de typage bactérien.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Alcaligenaceae (classification), Alcaligenaceae (isolation & purification), Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Ubiquinone (chemistry).
- MESH :
- chemical , chemistry : Fatty Acids, Phospholipids, Ubiquinone.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- geographic : China.
- classification : Alcaligenaceae.
- isolation & purification : Alcaligenaceae.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, Phylogeny, Sequence Analysis, DNA.
Abstract
One Gram-negative aerobic bacterial strain was isolated from the bark tissue of Populus × euramericana and investigated using a polyphasic approach including 16S rRNA gene sequencing and both phenotypic and chemotaxonomic assays. The 16S rRNA gene and housekeeping gene phylogenies suggest that the novel isolate is different from the other genera of the family Alcaligenaceae. The G+C content, major fatty acids, physiological and biochemical data supported the distinctiveness of the novel strain from reference species. The major fatty acids detected in the novel isolate were C16 : 1ω7c and/or C16 : 1ω6c, C16 : 0, C14 : 0 3OH and/or C16 : 1isoI and C18 : 1ω7c. The phospholipid profile of strain d3-2-2T contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminolipid, aminophospholipid and an unidentified lipid. The quinone of the novel isolate was Q-8. Therefore, based on the data, the strain constitutes a novel species of a novel genus within the family Alcaligenaceae, for which the name Corticimicrobacter populi gen. nov., sp. nov. is proposed. The type strain is 3d-2-2T (=CFCC 11891T=KCTC 52807T).
DOI: 10.1099/ijsem.0.003483
PubMed: 31140966
Affiliations:
Links toward previous steps (curation, corpus...)
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wicri:level="3"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Gao, Li Fang" sort="Gao, Li Fang" uniqKey="Gao L" first="Li-Fang" last="Gao">Li-Fang Gao</name><affiliation wicri:level="1"><nlm:affiliation>Administrative Committee of Puyang Economic and Technological Development Zone, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Administrative Committee of Puyang Economic and 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type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alcaligenaceae (classification)</term><term>Alcaligenaceae (isolation & purification)</term><term>Bacterial Typing Techniques (MeSH)</term><term>Base Composition (MeSH)</term><term>China (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>Fatty Acids (chemistry)</term><term>Phospholipids (chemistry)</term><term>Phylogeny (MeSH)</term><term>Plant Bark (microbiology)</term><term>Populus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Ubiquinone (chemistry)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides gras (composition chimique)</term><term>Alcaligenaceae (classification)</term><term>Alcaligenaceae (isolement et purification)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chine (MeSH)</term><term>Composition en bases nucléiques (MeSH)</term><term>Phospholipides (composition chimique)</term><term>Phylogenèse (MeSH)</term><term>Populus (microbiologie)</term><term>Techniques de typage bactérien (MeSH)</term><term>Ubiquinones (composition chimique)</term><term>Écorce (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term><term>Phospholipids</term><term>Ubiquinone</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Alcaligenaceae</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Acides gras</term><term>Alcaligenaceae</term><term>Phospholipides</term><term>Ubiquinones</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ARN ribosomique 16S</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Alcaligenaceae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Alcaligenaceae</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term><term>Écorce</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Chine</term><term>Composition en bases nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">One Gram-negative aerobic bacterial strain was isolated from the bark tissue of <i>Populus × euramericana</i> and investigated using a polyphasic approach including 16S rRNA gene sequencing and both phenotypic and chemotaxonomic assays. The 16S rRNA gene and housekeeping gene phylogenies suggest that the novel isolate is different from the other genera of the family <i>Alcaligenaceae.</i> The G+C content, major fatty acids, physiological and biochemical data supported the distinctiveness of the novel strain from reference species. The major fatty acids detected in the novel isolate were C<sub>16 : 1</sub>ω7<i>c</i> and/or C<sub>16 : 1</sub>ω6<i>c</i>, C<sub>16 : 0</sub>, C<sub>14 : 0</sub> 3OH and/or C<sub>16 : 1</sub>isoI and C<sub>18 : 1</sub>ω7<i>c</i>. The phospholipid profile of strain d3-2-2<sup>T</sup> contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminolipid, aminophospholipid and an unidentified lipid. The quinone of the novel isolate was Q-8. Therefore, based on the data, the strain constitutes a novel species of a novel genus within the family <i>Alcaligenaceae</i>, for which the name <i>Corticimicrobacter populi</i> gen. nov., sp. nov. is proposed. The type strain is 3d-2-2<sup>T</sup> (=CFCC 11891<sup>T</sup>=KCTC 52807<sup>T</sup>).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">31140966</PMID><DateCompleted><Year>2019</Year><Month>10</Month><Day>08</Day></DateCompleted><DateRevised><Year>2019</Year><Month>10</Month><Day>08</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><Volume>69</Volume><Issue>10</Issue><PubDate><Year>2019</Year><Month>Oct</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle><i>Corticimicrobacter populi</i> gen. nov., sp. nov., a member of the family <i>Alcaligenaceae</i>, isolated from symptomatic bark of Populus × <i>euramericana canker</i>.</ArticleTitle><Pagination><MedlinePgn>2987-2991</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.003483</ELocationID><Abstract><AbstractText>One Gram-negative aerobic bacterial strain was isolated from the bark tissue of <i>Populus × euramericana</i> and investigated using a polyphasic approach including 16S rRNA gene sequencing and both phenotypic and chemotaxonomic assays. The 16S rRNA gene and housekeeping gene phylogenies suggest that the novel isolate is different from the other genera of the family <i>Alcaligenaceae.</i> The G+C content, major fatty acids, physiological and biochemical data supported the distinctiveness of the novel strain from reference species. The major fatty acids detected in the novel isolate were C<sub>16 : 1</sub>ω7<i>c</i> and/or C<sub>16 : 1</sub>ω6<i>c</i>, C<sub>16 : 0</sub>, C<sub>14 : 0</sub> 3OH and/or C<sub>16 : 1</sub>isoI and C<sub>18 : 1</sub>ω7<i>c</i>. The phospholipid profile of strain d3-2-2<sup>T</sup> contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminolipid, aminophospholipid and an unidentified lipid. The quinone of the novel isolate was Q-8. Therefore, based on the data, the strain constitutes a novel species of a novel genus within the family <i>Alcaligenaceae</i>, for which the name <i>Corticimicrobacter populi</i> gen. nov., sp. nov. is proposed. The type strain is 3d-2-2<sup>T</sup> (=CFCC 11891<sup>T</sup>=KCTC 52807<sup>T</sup>).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xue</LastName><ForeName>Han</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bian</LastName><ForeName>Danran</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Li-Fang</ForeName><Initials>LF</Initials><AffiliationInfo><Affiliation>Administrative Committee of Puyang Economic and Technological Development Zone, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piao</LastName><ForeName>Chun-Gen</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>1339-63-5</RegistryNumber><NameOfSubstance UI="D014451">Ubiquinone</NameOfSubstance></Chemical><Chemical><RegistryNumber>CQA993F7P8</RegistryNumber><NameOfSubstance UI="C030778">ubiquinone 8</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D042401" MajorTopicYN="N">Alcaligenaceae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014451" MajorTopicYN="N">Ubiquinone</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Alcaligenaceae</Keyword><Keyword MajorTopicYN="N">aerobic bacteria</Keyword><Keyword MajorTopicYN="N">new taxa</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>10</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31140966</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.003483</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name></noRegion><name sortKey="Bian, Danran" sort="Bian, Danran" uniqKey="Bian D" first="Danran" last="Bian">Danran Bian</name><name sortKey="Gao, Li Fang" sort="Gao, Li Fang" uniqKey="Gao L" first="Li-Fang" last="Gao">Li-Fang Gao</name><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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